You should be able to set the transom mount up so that it gives a decent picture at speed. If you read the manual and set it up accordingly, then it will work well. Te deep V hull actually helps get it into clear water, but you will have to play around getting it set up right. Having said that, any competent and experienced installer should get it right pretty well first go. That could be your problem.......
That being said, the thru-hulls that fits flush will definitely perform better at all speeds, particularly faster speeds. So it would be a better option for the long term.
The choices would be to stay with a standard 600w transducer such as the Airmar B60, (or SS60 which is the same element in a stainless steel housing vs the bronze of the B60), or since you are going to the trouble of cutting a nice big hole in the hull, going to a higher performance level with the Airmar B/SS 164 which is a 1kw 50/200 transducer, which is 6 times more sensitive at 50khz and twice as sensitive at 200khz. That would be the better option, I would think.
Or you could go the full monty and get the SS264n pair (2 x95mm holes in the hull!) which will be about 50 times more sensitive. See http://www.airmartechnology.com/2009...&manf=Lowrance. It will cost a motza if you buy it here in Aus but you can get them in from the States for under $2k. That way, you'll be able to see a herring hiding in a cave n the bottom in 250m of watet!