In fact the reverse of this is true and the opposite naturally occurs.A FULLY CHARGED battery has LOW internal resistance, and as the battery discharges, it's internal resistance INCREASES.
Therefore, if you try to charge two batteries in PARALLEL, the battery with the higher charge offers a lower resistance to the flow of current from the charger, and therefore will take most of the current (charge).
Also the real upside to using a battery 1/2/Both/Off switch is to avoid one good battery masking a failing battery.